Package-by-biocView Membership Matrix

Usage

get_view_membership_matrix(pkg_list = NULL)

Arguments

pkg_list: Value of a call to biocPkgList(). If NULL (default), will call biocPkgList() internally. See Details.

Value

A logical matrix indicating packages associated with each biocViews term (or one of its child terms).

Details

Calling BiocPkgTools::biocPkgList() and passing the result to get_packages_by_view() or get_packages_by_views() is more efficient if you are making multiple calls. See vignette 'Optimisations' for a more comprehensive discussion and demonstration.

Examples

out <- get_view_membership_matrix()
#> 'getOption("repos")' replaces Bioconductor standard repositories, see
#> 'help("repositories", package = "BiocManager")' for details.
#> Replacement repositories:
#>     CRAN: https://p3m.dev/cran/__linux__/noble/latest
out[1:5, 1:5]
#>           BiocViews Software AnnotationData ExperimentData Workflow
#> a4             TRUE     TRUE          FALSE          FALSE    FALSE
#> a4Base         TRUE     TRUE          FALSE          FALSE    FALSE
#> a4Classif      TRUE     TRUE          FALSE          FALSE    FALSE
#> a4Core         TRUE     TRUE          FALSE          FALSE    FALSE
#> a4Preproc      TRUE     TRUE          FALSE          FALSE    FALSE