Get Packages by biocViews
get_packages_by_view.Rd
get_packages_by_view()
returns package names associated with a single biocViews term.
get_packages_by_views()
returns packages names at the intersection of multiple biocViews terms.
Details
Calling BiocPkgTools::biocPkgList()
and passing the result to
get_packages_by_view()
or get_packages_by_views()
is more efficient
if you are making multiple calls.
See vignette 'Optimisations' for a more comprehensive discussion and demonstration.
Examples
get_packages_by_view("Spatial")
#> 'getOption("repos")' replaces Bioconductor standard repositories, see
#> 'help("repositories", package = "BiocManager")' for details.
#> Replacement repositories:
#> CRAN: https://p3m.dev/cran/__linux__/noble/latest
#> [1] "alabaster.sfe" "Banksy"
#> [3] "BatchSVG" "betaHMM"
#> [5] "BulkSignalR" "CARDspa"
#> [7] "clustSIGNAL" "concordexR"
#> [9] "CTSV" "cytoviewer"
#> [11] "DESpace" "escheR"
#> [13] "FuseSOM" "GeomxTools"
#> [15] "ggsc" "ggspavis"
#> [17] "HiCPotts" "hoodscanR"
#> [19] "HuBMAPR" "imcRtools"
#> [21] "jazzPanda" "knowYourCG"
#> [23] "lisaClust" "miRspongeR"
#> [25] "mistyR" "mitology"
#> [27] "MoleculeExperiment" "nnSVG"
#> [29] "OSTA.data" "pengls"
#> [31] "poem" "RegionalST"
#> [33] "retrofit" "scatterHatch"
#> [35] "sccomp" "scDesign3"
#> [37] "scider" "SEraster"
#> [39] "shinyDSP" "signifinder"
#> [41] "simpleSeg" "smoothclust"
#> [43] "smoppix" "sosta"
#> [45] "SpaceTrooper" "spacexr"
#> [47] "SpaNorm" "spARI"
#> [49] "spaSim" "SpatialDecon"
#> [51] "SpatialExperiment" "SpatialExperimentIO"
#> [53] "spatialFDA" "SpatialFeatureExperiment"
#> [55] "SpatialOmicsOverlay" "spatialSimGP"
#> [57] "SPIAT" "spicyR"
#> [59] "spoon" "SpotClean"
#> [61] "SPOTlight" "SpotSweeper"
#> [63] "standR" "Statial"
#> [65] "stJoincount" "stPipe"
#> [67] "SVP" "tidySpatialExperiment"
#> [69] "tomoda" "tomoseqr"
#> [71] "tpSVG" "VisiumIO"
#> [73] "visiumStitched" "Voyager"
#> [75] "XeniumIO" "CatsCradle"
#> [77] "scFeatures" "SpaceMarkers"
#> [79] "spatialHeatmap"
get_packages_by_views(c("Spatial", "SingleCell"))
#> 'getOption("repos")' replaces Bioconductor standard repositories, see
#> 'help("repositories", package = "BiocManager")' for details.
#> Replacement repositories:
#> CRAN: https://p3m.dev/cran/__linux__/noble/latest
#> [1] "Banksy" "CARDspa" "clustSIGNAL"
#> [4] "concordexR" "cytoviewer" "DESpace"
#> [7] "escheR" "FuseSOM" "ggsc"
#> [10] "ggspavis" "hoodscanR" "HuBMAPR"
#> [13] "imcRtools" "knowYourCG" "lisaClust"
#> [16] "miRspongeR" "mistyR" "mitology"
#> [19] "nnSVG" "OSTA.data" "poem"
#> [22] "retrofit" "scatterHatch" "sccomp"
#> [25] "scDesign3" "SEraster" "signifinder"
#> [28] "simpleSeg" "smoothclust" "smoppix"
#> [31] "SpaceTrooper" "spacexr" "SpatialExperiment"
#> [34] "SpatialExperimentIO" "SPIAT" "spicyR"
#> [37] "spoon" "SpotClean" "SPOTlight"
#> [40] "Statial" "stPipe" "SVP"
#> [43] "tidySpatialExperiment" "VisiumIO" "XeniumIO"
#> [46] "CatsCradle" "scFeatures" "SpaceMarkers"
#> [49] "spatialHeatmap"