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Combined Package Listing from all Bioconductor Repositories

get_all_biocpkglist.Rd

This function is a convenience wrapper that invokes BiocPkgTools::biocPkgList() for each of the known Bioconductor repositories ("BioCsoft", "BioCexp", "BioCworkflows", and "BioCann") and combines the results into a single data frame.

Usage

get_all_biocpkglist(verbose = TRUE)

Arguments

verbose

Logical. Set to FALSE to suppress messages while fetching information from the Bioconductor repositories.

Value

A data frame with one row per package and columns for package metadata, including the repository it belongs to (column 'Repository').

Examples

biocpkglist <- get_all_biocpkglist()
#> 'getOption("repos")' replaces Bioconductor standard repositories, see
#> 'help("repositories", package = "BiocManager")' for details.
#> Replacement repositories:
#>     CRAN: https://p3m.dev/cran/__linux__/noble/latest
#> 'getOption("repos")' replaces Bioconductor standard repositories, see
#> 'help("repositories", package = "BiocManager")' for details.
#> Replacement repositories:
#>     CRAN: https://p3m.dev/cran/__linux__/noble/latest
#> 'getOption("repos")' replaces Bioconductor standard repositories, see
#> 'help("repositories", package = "BiocManager")' for details.
#> Replacement repositories:
#>     CRAN: https://p3m.dev/cran/__linux__/noble/latest
#> 'getOption("repos")' replaces Bioconductor standard repositories, see
#> 'help("repositories", package = "BiocManager")' for details.
#> Replacement repositories:
#>     CRAN: https://p3m.dev/cran/__linux__/noble/latest