Changelog • velociraptor

Fix issue #63.
Update scvelo to 0.3.2 (conda-forge) for macOS (M1) and Linux.
Update scvelo to 0.2.5 (bioconda) for Windows.
Add mechanism to switch Conda environment (and scvelo version) based on operating system and architecture.
Use scanpy.pp.neighbors to calculate neighbors due to deprecation of automatic neighbor calculation in scvelo.pp.moments.
Update vignette to document the change of default value for n_neighbors from scvelo (30) to scanpy (15).

Robust fallback mechanism using basiliskRun option testload=.

Pin python version in conda environment.

Remove column names from reduced dimension matrix in gridVectors().

Remove column names of reduced dimension representation before velocity embedding.

Add example for scvelo.params argument.

Add typing_extensions to environment.

Move sanity check vignette to inst/.

Add Michael Stadler to package authors.

Fix typo in documentation.

Add vignette subdirectory with sanity checks.

Add functions plotVelocity and plotVelocityStream.

Refresh cached environments.

Bioconductor release 1.1.0.

Converted various functions to S4 generics for easier use with SingleCellExperiment objects.

Trigger new build to repeat ExperimentHub download.

Delete empty line to force cache update. See https://github.com/rubocop-hq/rubocop/pull/4342#issuecomment-305449759.

Set autoscale=FALSE in the call to scvelo function velocity_embedding to avoid issue related to Qt and plotting.

Trigger new build to check if Windows issue resolved itself.

Trigger new build to check whether TIMEOUT issue on Windows is reproducible.

Explicitly declare all Conda dependencies for scvelo.

Add hexsticker.

Remove .Rproj file from git repository.

First submission to Bioconductor.