FuzzyHits()
FuzzyHits Class
membership() `membership<-`()
membership()
`membership<-`()
Methods for FuzzyHits Objects
FuzzyHits
FuzzySets()
FuzzySets Class
membership(<FuzzySets>) `membership<-`(<FuzzySets>) as.matrix(<FuzzySets>) as.FuzzySets.matrix()
membership(<FuzzySets>)
`membership<-`(<FuzzySets>)
as.matrix(<FuzzySets>)
as.FuzzySets.matrix()
Methods for FuzzySets Objects
FuzzySets
GOEvidenceCodes GOOntologyCodes GOHits()
GOEvidenceCodes
GOOntologyCodes
GOHits()
GOHits Class
ontology() `ontology<-`() evidence() `evidence<-`()
ontology()
`ontology<-`()
evidence()
`evidence<-`()
Methods for GOHits Objects
GOHits
GOSets()
GOSets Class
evidence(<GOSets>) `evidence<-`(<GOSets>) ontology(<GOSets>) `ontology<-`(<GOSets>)
evidence(<GOSets>)
`evidence<-`(<GOSets>)
ontology(<GOSets>)
`ontology<-`(<GOSets>)
Methods for GOSets Objects
GOSets
IdVector() EntrezIdVector() EnsemblIdVector() GOIdVector()
IdVector()
EntrezIdVector()
EnsemblIdVector()
GOIdVector()
IdVector Class
`ids<-`() ids(<IdVector>) names(<IdVector>) `names<-`(<IdVector>,<ANY>) length(<IdVector>) duplicated(<IdVector>) `[`(<IdVector>,<ANY>,<ANY>,<ANY>) as.vector(<IdVector>) as.character(<IdVector>) as.IdVector.default()
`ids<-`()
ids(<IdVector>)
names(<IdVector>)
`names<-`(<IdVector>,<ANY>)
length(<IdVector>)
duplicated(<IdVector>)
`[`(<IdVector>,<ANY>,<ANY>,<ANY>)
as.vector(<IdVector>)
as.character(<IdVector>)
as.IdVector.default()
Methods for IdVector objects
IdVector
Sets()
Sets Class
relations() `relations<-`() elements() elementInfo() `elementInfo<-`() sets() setInfo() `setInfo<-`() nElements() nSets() setLengths() elementLengths() length(<Sets>) c(<Sets>) `[`(<Sets>,<ANY>,<ANY>,<ANY>) subset(<Sets>) duplicated(<Sets>) unique(<Sets>) union.Sets() as.DataFrame.Sets() as.data.frame(<Sets>) as.list(<Sets>) as.matrix(<Sets>) as.Sets.list() as.Sets.matrix()
relations()
`relations<-`()
elements()
elementInfo()
`elementInfo<-`()
sets()
setInfo()
`setInfo<-`()
nElements()
nSets()
setLengths()
elementLengths()
length(<Sets>)
c(<Sets>)
`[`(<Sets>,<ANY>,<ANY>,<ANY>)
subset(<Sets>)
duplicated(<Sets>)
unique(<Sets>)
union.Sets()
as.DataFrame.Sets()
as.data.frame(<Sets>)
as.list(<Sets>)
as.matrix(<Sets>)
as.Sets.list()
as.Sets.matrix()
Methods for Sets Objects
Sets
GMTFile() import.gmt() import(<GMTFile>,<ANY>,<ANY>) export.gmt() export(<Sets>,<GMTFile>,<ANY>) import.Go3AnnDbBimap() import(<Go3AnnDbBimap>,<ANY>,<ANY>)
GMTFile()
import.gmt()
import(<GMTFile>,<ANY>,<ANY>)
export.gmt()
export(<Sets>,<GMTFile>,<ANY>)
import.Go3AnnDbBimap()
import(<Go3AnnDbBimap>,<ANY>,<ANY>)
Import and export