Changelog

Source: NEWS.md

hancock 0.99.0

• Added a NEWS.md file to track changes to the package.
• Added Travis continuous integration.
• Added testthat unit tests.
• Added codecov code coverage.
• Added vignette discussing concepts related to the package functionality.
• Added methods for the detection of markers and signatures: positiveForMarker (generic), makeMarkerDetectionMatrix, makeSignatureDetectionMatrix.
• Added support for gene set classes GeneSetCollection, tbl_geneset, and BaseSets defined in packages GSEABase, GeneSet, and unisets.
• Added prediction method ProportionPositive.
• Added learning method PositiveProportionDifference.
• Added plotting function plotProportionPositive.
• Added helper functions: makeFilterExpression, uniqueMarkers, uniqueSetNames.
• Added Shiny function: shinyLabels.