Challenge Topics
topic_tags format_topics(params)
| params | Challenge parameters as |
|---|
topic_tags is a character vector of valid topic tags.
format_topics() returns a character value indicating the challenge topic tags.
topic_tags #> [1] "aCGH" "adme16cod" #> [3] "AffymetrixChip" "ag" #> [5] "AgilentChip" "Agroinformatics" #> [7] "Alignment" "AlternativeSplicing" #> [9] "Annotation" "AnnotationData" #> [11] "AnnotationHub" "AnnotationHubSoftware" #> [13] "AnnotationWorkflow" "Anopheles_gambiae" #> [15] "Anopheles_gambiae_Data" "Apis_mellifera" #> [17] "Apis_mellifera_Data" "Arabidopsis_lyrata" #> [19] "Arabidopsis_lyrata_Data" "Arabidopsis_thaliana" #> [21] "Arabidopsis_thaliana_Data" "ArrayExpress" #> [23] "Asparagus_officinalis" "AssayDomain" #> [25] "AssayDomainData" "ATACSeq" #> [27] "ath1121501" "Bacillus_subtilis" #> [29] "Bacillus_subtilis_Data" "BasicWorkflow" #> [31] "BatchEffect" "Bayesian" #> [33] "BioCarta" "BiocViews" #> [35] "BiologicalQuestion" "BiomedicalInformatics" #> [37] "Biophysics" "BioPlex" #> [39] "Bos_taurus" "Bos_taurus_Data" #> [41] "BreastCancerData" "BSgenome" #> [43] "BugSigDB" "Caenorhabditis_elegans" #> [45] "Caenorhabditis_elegans_Data" "Callithrix_jacchus" #> [47] "Callithrix_jacchus_Data" "CancerData" #> [49] "Canis_familiaris" "Canis_familiaris_Data" #> [51] "cdf" "celegans" #> [53] "CellBasedAssays" "CellBiology" #> [55] "CellCulture" "CGHData" #> [57] "Challenges" "Cheminformatics" #> [59] "ChIPchip" "ChipDb" #> [61] "ChipManufacturer" "ChipName" #> [63] "ChipOnChip" "ChipOnChipData" #> [65] "ChIPSeq" "ChIPSeqData" #> [67] "Chlamydomonas_reinhardtii" "Cicer_arietinum" #> [69] "Ciona_intestinalis" "Ciona_intestinalis_Data" #> [71] "Classification" "ClonetechChip" #> [73] "Clustering" "CodelinkChip" #> [75] "ColonCancerData" "Community" #> [77] "ComparativeGenomics" "ComputationalChemistry" #> [79] "COPDData" "CopyNumberVariation" #> [81] "CopyNumberVariationData" "Coverage" #> [83] "CpGIsland" "CpGIslandData" #> [85] "CRISPR" "CustomArray" #> [87] "CustomCDF" "CustomDBSchema" #> [89] "Danio_rerio" "Danio_rerio_Data" #> [91] "DataImport" "DataRepresentation" #> [93] "db0" "ddPCR" #> [95] "DecisionTree" "DemethylateRegionDetection" #> [97] "DenovoAssembler" "DenovoGenome" #> [99] "DenovoTranscriptome" "DifferentialDNA3DStructure" #> [101] "DifferentialExpression" "DifferentialMethylation" #> [103] "DifferentialPeakCalling" "DifferentialSplicing" #> [105] "DifferentialSplicingWorkflow" "DimensionReduction" #> [107] "DiseaseModel" "DNA3DStructure" #> [109] "DNAMethylation" "DNASeq" #> [111] "DNASeqData" "DNaseSeq" #> [113] "DriverMutation" "drosgenome1" #> [115] "Drosophila_melanogaster" "Drosophila_melanogaster_Data" #> [117] "Drosophila_virilis" "Drosophila_virilis_Data" #> [119] "drosophila2" "ENCODE" #> [121] "Epigenetics" "EpigeneticsWorkflow" #> [123] "Epitranscriptomics" "Eremothecium_gossypii" #> [125] "Eremothecium_gossypii_Data" "Escherichia_coli" #> [127] "Escherichia_coli_Data" "EuPathDB" #> [129] "ExomeSeq" "ExomeSeqData" #> [131] "ExonArray" "ExperimentalDesign" #> [133] "ExperimentData" "ExperimentHub" #> [135] "ExperimentHubSoftware" "ExpressionData" #> [137] "FeatureExtraction" "FlowCytometry" #> [139] "FlowCytometryData" "FRMA" #> [141] "FunctionalAnnotation" "FunctionalGenomics" #> [143] "FunctionalPrediction" "GACustomCDF" #> [145] "Gallus_gallus" "Gallus_gallus_Data" #> [147] "Gasterosteus_aculeatus" "Gasterosteus_aculeatus_Data" #> [149] "GEChip" "GeneCardsCustomSchema" #> [151] "GeneExpression" "GeneExpressionWorkflow" #> [153] "GeneFusionDetection" "GenePrediction" #> [155] "GeneRegulation" "GeneSetEnrichment" #> [157] "GeneSignaling" "GeneTarget" #> [159] "Genetics" "GeneticVariability" #> [161] "Genome" "GenomeAnnotation" #> [163] "GenomeAssembly" "GenomeBrowsers" #> [165] "GenomeWideAssociation" "GenomicSequence" #> [167] "GenomicVariantsWorkflow" "GenomicVariation" #> [169] "GenotypingArray" "GenotypingArrayData" #> [171] "GEO" "Germline" #> [173] "GermlineMutation" "Glycine_max" #> [175] "Glycine_max_Data" "GO" #> [177] "GraphAndNetwork" "GUI" #> [179] "h10kcod" "h20kcod" #> [181] "HapMap" "hcg110" #> [183] "hcgi12k" "hcgi8k" #> [185] "hgfocus" "hgu133a" #> [187] "hgu133a2" "hgu133b" #> [189] "hgu133plus2" "hgu95a" #> [191] "hgu95av2" "hgu95b" #> [193] "hgu95c" "hgu95d" #> [195] "hgu95e" "hguatlas13k" #> [197] "hgug4100a" "hgug4101a" #> [199] "hgug4110b" "hgug4111a" #> [201] "hgug4112a" "hguqiagenv3" #> [203] "hi16cod" "HiC" #> [205] "HiddenMarkovModel" "HighThroughputImagingData" #> [207] "HistoneModification" "HIVData" #> [209] "Homo_sapiens" "Homo_sapiens_Data" #> [211] "Hordeum_vulgare" "Hordeum_vulgare_Data" #> [213] "hs25kresogen" "hu35ksuba" #> [215] "hu35ksubb" "hu35ksubc" #> [217] "hu35ksubd" "hu6800" #> [219] "HuO22" "hwgcod" #> [221] "IlluminaChip" "illuminaHumanv1" #> [223] "illuminaHumanv2" "illuminaMousev1" #> [225] "illuminaMousev1p1" "illuminaRatv1" #> [227] "ImagingMassSpectrometry" "ImagingMassSpectrometryData" #> [229] "ImmunoOncology" "ImmunoOncologyData" #> [231] "ImmunoOncologyWorkflow" "indac" #> [233] "INDACChip" "IndelDetection" #> [235] "Infrastructure" "InparanoidDb" #> [237] "Instrumentation" "JazaerimetaData" #> [239] "KEGG" "KidneyCancerData" #> [241] "Kluyveromyces_lactis" "Kluyveromyces_lactis_Data" #> [243] "LeukemiaCancerData" "LinkageDisequilibrium" #> [245] "Lipidomics" "lumiHumanV1" #> [247] "lumiHumanV2" "lumiMouseV1" #> [249] "lumiRatV1" "LungCancerData" #> [251] "m10kcod" "m20kcod" #> [253] "Macaca_fascicularis" "Macaca_mulatta" #> [255] "Macaca_mulatta_Data" "Magnaporthe_grisea" #> [257] "Magnaporthe_grisea_Data" "MassSpectrometry" #> [259] "MassSpectrometryData" "MathematicalBiology" #> [261] "MBNICustomCDF" "Medicago_truncatul_Data" #> [263] "Medicago_truncatula" "MeSHDb" #> [265] "Metabolomics" "MetagenomeAssembly" #> [267] "Metagenomics" "MethylationArray" #> [269] "MethylationArrayData" "MethylSeq" #> [271] "MethylSeqData" "mgu74a" #> [273] "mgu74av2" "mgu74b" #> [275] "mgu74bv2" "mgu74c" #> [277] "mgu74cv2" "mguatlas5k" #> [279] "mgug4121a" "mgug4122a" #> [281] "mi16cod" "Microarray" #> [283] "MicroarrayData" "MicrobialStrain" #> [285] "Microbiome" "MicrobiomeData" #> [287] "MicroRNAArray" "MicroRNAArrayData" #> [289] "MicrosatelliteDetection" "MicrotitrePlateAssay" #> [291] "MicrotitrePlateAssayData" "miRNA" #> [293] "miRNAData" "mm24kresogen" #> [295] "MNaseSeq" "moe430a" #> [297] "moe430b" "Monodelphis_domestica" #> [299] "Monodelphis_domestica_Data" "MotifAnnotation" #> [301] "MotifDiscovery" "mouse4302" #> [303] "mouse430a2" "mpedbarray" #> [305] "mRNAArrayData" "mRNAMicroarray" #> [307] "mu11ksuba" "mu11ksubb" #> [309] "Mu15v1" "mu19ksuba" #> [311] "mu19ksubb" "mu19ksubc" #> [313] "Mu22v3" "MultiChannel" #> [315] "MultiChannelData" "MultidimensionalScaling" #> [317] "MultipleComparison" "MultipleSequenceAlignment" #> [319] "Mus_musculus" "Mus_musculus_Data" #> [321] "mwgcod" "NCI" #> [323] "NCINatureCurated" "Network" #> [325] "NetworkEnrichment" "NetworkInference" #> [327] "NeuralNetwork" "Neurospora_crassa" #> [329] "Neurospora_crassa_Data" "Normalization" #> [331] "Norway981" "NucleosomePositioning" #> [333] "Oncorhynchus_mykiss" "Oncorhynchus_mykiss_Data" #> [335] "OneChannel" "OneChannelData" #> [337] "OperonHumanV3" "Organism" #> [339] "OrganismData" "OrganismDb" #> [341] "OrgDb" "Oryza_sativa" #> [343] "Oryza_sativa_Data" "OvarianCancerData" #> [345] "PackageType" "PackageTypeData" #> [347] "Pan_paniscus" "Pan_paniscus_Data" #> [349] "Pan_troglodytes" "Pan_troglodytes_Data" #> [351] "PartheenMetaData" "PathwayInteractionDatabase" #> [353] "Pathways" "PatternLogic" #> [355] "PeakDetection" "pedbarrayv10" #> [357] "pedbarrayv9" "Pharmacogenetics" #> [359] "Pharmacogenomics" "Phylogenetics" #> [361] "Plasmodium_falciparum" "Plasmodium_falciparum_Data" #> [363] "PolyPhen" "PooledScreens" #> [365] "Preprocessing" "PrincipalComponent" #> [367] "probe" "Project1000genomes" #> [369] "ProprietaryPlatforms" "ProprietaryPlatformsData" #> [371] "ProstateCancerData" "Proteome" #> [373] "Proteomics" "ProteomicsWorkflow" #> [375] "Pseudomonas_aeruginosa" "Pseudomonas_aeruginosa_Data" #> [377] "QiagenChip" "qPCR" #> [379] "qPCRData" "QualityControl" #> [381] "QuantitativeTrailLocus" "r10kcod" #> [383] "rae230a" "rae230b" #> [385] "rat2302" "Rattus_norvegicus" #> [387] "Rattus_norvegicus_Data" "Reactome" #> [389] "Regression" "ReportWriting" #> [391] "RepositoryData" "ReproducibleResearch" #> [393] "ResearchField" "ResourceQueryingWorkflow" #> [395] "ReversePhaseProteinArray" "ReversePhaseProteinArrayData" #> [397] "rgu34a" "rgu34b" #> [399] "rgu34c" "rgug4130a" #> [401] "ri16cod" "RiboSeq" #> [403] "RIPSeq" "RIPSeqData" #> [405] "RNASeq" "RNASeqData" #> [407] "RNG_MRCChip" "rnu34" #> [409] "Roberts2005Annotation" "RocheChip" #> [411] "rtu34" "rwgcod" #> [413] "Saccharomyces_cerevisiae" "Saccharomyces_cerevisiae_Data" #> [415] "Saccharum_officinarum" "Saccharum_officinarum_Data" #> [417] "SAGE" "SAGEData" #> [419] "SangerSeq" "SangerSeqData" #> [421] "Scaffolding" "Schizosaccharomyces_pombe" #> [423] "Schizosaccharomyces_pombe_Data" "SequenceAnnotation" #> [425] "SequenceMatching" "Sequencing" #> [427] "SequencingData" "SHDZ" #> [429] "ShinyApps" "SIFT" #> [431] "SingleCell" "SingleCellData" #> [433] "SingleCellWorkflow" "SmallRNA" #> [435] "SmallRNAData" "SNP" #> [437] "SNPData" "SNPlocs" #> [439] "Software" "Somatic" #> [441] "SomaticMutation" "Spatial" #> [443] "SpatialData" "SpatialWorkflow" #> [445] "SpecimenSource" "SplicedAlignment" #> [447] "Staphylococcus_aureus" "Staphylococcus_aureus_Data" #> [449] "StatisticalMethod" "StemCell" #> [451] "StructuralEquationModels" "StructuralGenomics" #> [453] "StructuralPrediction" "StructuralVariation" #> [455] "SupportVectorMachine" "Survival" #> [457] "Sus_scrofa" "Sus_scrofa_Data" #> [459] "SystemsBiology" "Taeniopygia_guttata" #> [461] "Taeniopygia_guttata_Data" "TargetedResequencing" #> [463] "Technology" "TechnologyData" #> [465] "ThirdPartyClient" "TimeCourse" #> [467] "Tissue" "TissueMicroarray" #> [469] "TissueMicroarrayData" "Toxoplasma_gondii" #> [471] "Transcription" "TranscriptomeVariant" #> [473] "Transcriptomics" "Triticum_aestivum" #> [475] "Triticum_aestivum_Data" "TwoChannel" #> [477] "TwoChannelData" "TxDb" #> [479] "u133x3p" "UniversityHealthNetwork" #> [481] "VariantAnnotation" "VariantDetection" #> [483] "Visualization" "Vitis_vinifera" #> [485] "Vitis_vinifera_Data" "WholeGenome" #> [487] "Workflow" "WorkflowStep" #> [489] "Xenopus_laevis" "Xenopus_laevis_Data" #> [491] "Xenopus_tropicalis" "Xenopus_tropicalis_Data" #> [493] "xenopuslaevis" "XtraSNPlocs" #> [495] "yeast2" "ygs98" #> [497] "Zea_mays" "Zea_mays_Data" #> [499] "zebrafish" params <- list(topics = c("Challenges", "Community")) cat(format_topics(params)) #> - `Challenges` #> #> - `Community`